I'd like to pass along some information from my archives (I saved this from the macintouch.com web site) regarding possible conflicts between El Capitan and some USB hubs.
I can't confirm any of this (don't have any USB3 hubs myself) -- just passing this info along:
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James Katt
I held off on upgrading my MacBook Pro 15 Retina to OS X 10.11 El Capitan because it is my work computer. I finally was forced to upgrade this past weekend after several app developers decided to only support OS X 10.11 for their apps.
Generally things worked well except for the USB 3.0 ports and the printer driver to my Lexmark T640 - and these problems drive me nuts.
In 10.11, an Apple engineer completely rewrote the USB drivers. The new drivers appear to employ the use of ACPI to a much greater extent than the previous drivers. The drivers use ACPI to obtain information about which ports are active. Often, this information is wrong and needs to be updated. But rather than update the information about what ports are active to correct the situation, Apple failed to do so. This is the bug.
In fact, this bug even prevented Apple's own Macs from working. So another Apple engineer rather than correct the bug, decided to hack OS X by creating a port injector to override the DSDT so that Macs could work. But this solution does not work for external USB 3.0 hubs.
The limitation that the new USB driver leaves us is that each external USB 3.0 hub needs one controller chip for every 4 USB 3.0 ports. Only a few external USB 3.0 hubs do this - such as the Plugable 7-Port USB 3.0 SuperSpeed Hub with 25W Power Adapter and Two Ports with BC 1.2 Charging Support.
So as a result of this driver bug, the vast majority of external USB 3.0 hubs with more than 4 ports fail.
I can't confirm any of this (don't have any USB3 hubs myself) -- just passing this info along:
=============
James Katt
I held off on upgrading my MacBook Pro 15 Retina to OS X 10.11 El Capitan because it is my work computer. I finally was forced to upgrade this past weekend after several app developers decided to only support OS X 10.11 for their apps.
Generally things worked well except for the USB 3.0 ports and the printer driver to my Lexmark T640 - and these problems drive me nuts.
In 10.11, an Apple engineer completely rewrote the USB drivers. The new drivers appear to employ the use of ACPI to a much greater extent than the previous drivers. The drivers use ACPI to obtain information about which ports are active. Often, this information is wrong and needs to be updated. But rather than update the information about what ports are active to correct the situation, Apple failed to do so. This is the bug.
In fact, this bug even prevented Apple's own Macs from working. So another Apple engineer rather than correct the bug, decided to hack OS X by creating a port injector to override the DSDT so that Macs could work. But this solution does not work for external USB 3.0 hubs.
The limitation that the new USB driver leaves us is that each external USB 3.0 hub needs one controller chip for every 4 USB 3.0 ports. Only a few external USB 3.0 hubs do this - such as the Plugable 7-Port USB 3.0 SuperSpeed Hub with 25W Power Adapter and Two Ports with BC 1.2 Charging Support.
So as a result of this driver bug, the vast majority of external USB 3.0 hubs with more than 4 ports fail.