I hope it keeps working for you. I just tried to unlock my MacBook using the touch ID on my Magic Keyboard -- no luck. Does nothing at all. It types just fine though. Once logged in, I tried to unlock my password manager with touch ID, again nothing at all. Turning the keyboard off and back on makes it work.I just used it again after about two hours and works. Can't just be a coincidence?
I'm on macOS Sonoma Beta 5 (23A5312d)
I have reported the bug using the Feedback Assistant. Hopefully someone at Apple sees it. I gave a link to this thread.
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